PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63525.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 346aa    MW: 38595.9 Da    PI: 10.4014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63525.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08115135526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C++f++ G Ck+Gd C +aHg
  MLOC_63525.1 115 ACPDFRK-GGCKRGDACEYAHG 135
                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5110136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5114137IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258145169IPR000571Zinc finger, CCCH-type
SMARTSM0035612145168IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMMMSEGVSV PPWGNLPVSG VDAGGGDETP FLFAALRQYL PCNDMAGAGG DDEDEAAAMA  60
AAVDAYACDE FRMYDFKVRR CARGRSHDWT ECPFAHPGEK ARRRDPRKYH YSGTACPDFR  120
KGGCKRGDAC EYAHGVFECW LHPARYRTQP CKDGTACRRR VCFFAHTPDQ LRAMPSQHSS  180
PRSTPLSPLA ESYDGSPLRR QAFESYLSKS IMSSSPTSTL LSSPPKSPPS ESPPLSPDGA  240
AASFRRGSWP GVGSPVNDVL ASLRQLRRAP QLRRRCRSRR RPRRRVGLRP HQLRQPVPSS  300
KFTLRSRSTR WHDGGGGKKK KEEKWHPKKI ILKFLLLFQV AANSCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266281RRAPQLRRRCRSRRRP
2274284RCRSRRRPRRR
3279284RRPRRR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63525.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546180.0AK354618.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009D01.
GenBankAK3571100.0AK357110.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1046E14.
GenBankAK3647770.0AK364777.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192020.11e-147zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-137C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A287KBZ70.0A0A287KBZ7_HORVV; Uncharacterized protein
TrEMBLF2CSL60.0F2CSL6_HORVV; Predicted protein
STRINGMLOC_63525.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.16e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]