PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63261.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family RAV
Protein Properties Length: 308aa    MW: 33526.1 Da    PI: 5.6392
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63261.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-123987155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s++kGV   + +grW A+I++      + r++lg+fg +e Aa a++ a+++++g
  MLOC_63261.1 39 SRFKGVVPQP-NGRWGAQIYEK-----HSRVWLGTFGDEEAAACAYDVAALRFRG 87
                  689***9788.8*********3.....5*************************98 PP
2B399.22.5e-31158249184
                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                   f+k+ltpsdv+k++rlv+pk++ae+h         g+  ++  l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+v+F++
  MLOC_63261.1 158 FEKALTPSDVGKLNRLVVPKQHAEKHfppttaaaAGSDGKGLLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVQEKGLCAGDTVTFSR 249
                   99***************************9999955667899************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-73987IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-153994IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-184095IPR001471AP2/ERF domain
CDDcd000181.46E-124093No hitNo description
PROSITE profilePS5103219.3354095IPR001471AP2/ERF domain
SMARTSM003801.3E-2540101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-38154269IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-26156250No hitNo description
SuperFamilySSF1019363.14E-29156250IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-28158252IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831158269IPR003340B3 DNA binding domain
SMARTSM010196.4E-21158256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MASSKPTNPE VDNDMECSSP ESGAEDAVES SSPVAAPSSR FKGVVPQPNG RWGAQIYEKH  60
SRVWLGTFGD EEAAACAYDV AALRFRGRDA VTNHQRLPAA EGAGWSSTSE LAFLADHSKA  120
EIVDMLRKHT YDDELRQGLR RGHGRAQPTP AWAREFLFEK ALTPSDVGKL NRLVVPKQHA  180
EKHFPPTTAA AAGSDGKGLL LNFEDGQGKV WRFRYSYWNS SQSYVLTKGW SRFVQEKGLC  240
AGDTVTFSRS AYVMNDTDEQ LFIDYKQSSK NDEAADVATA DENEAGHVAV KLFGVDIGWA  300
GMAGSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-4915527211121DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612890.0AK361289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164924.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS71e-123Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A287PV620.0A0A287PV62_HORVV; Uncharacterized protein
STRINGMLOC_63261.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-93ethylene response DNA binding factor 3