PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_63193.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | ARF | ||||||||
Protein Properties | Length: 306aa MW: 34594.6 Da PI: 10.1183 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.9 | 9.6e-24 | 71 | 172 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++++ MLOC_63193.4 71 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDERQ 163 99*****************************954.4444.48************************************************..45778 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++++r+ MLOC_63193.4 164 QLLLGIRRA 172 88***9997 PP | |||||||
2 | Auxin_resp | 120.5 | 1.3e-39 | 197 | 280 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ MLOC_63193.4 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 280 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-43 | 60 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-42 | 63 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.77E-21 | 70 | 162 | No hit | No description |
SMART | SM01019 | 1.5E-22 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 71 | 172 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.885 | 71 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.2E-34 | 197 | 280 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAR MTLQPVTSYG KEALQLSELA 60 LKQARPQNEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNV 120 WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS 180 SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM 240 RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGSVIRLGSI ILRHPALSAA 300 DPRTFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-142 | 2 | 281 | 89 | 368 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_63193.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367496 | 0.0 | AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09. | |||
GenBank | AK369713 | 0.0 | AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163202.1 | 0.0 | auxin response factor 19-like | ||||
Swissprot | Q0D9R7 | 0.0 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | A0A446XRL8 | 0.0 | A0A446XRL8_TRITD; Auxin response factor | ||||
TrEMBL | A0A453SLB0 | 0.0 | A0A453SLB0_AEGTS; Auxin response factor | ||||
STRING | EMT19609 | 0.0 | (Aegilops tauschii) | ||||
STRING | MLOC_63193.2 | 0.0 | (Hordeum vulgare) | ||||
STRING | Traes_7AL_F36D340F4.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_7DL_343A252DC.1 | 0.0 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-150 | auxin response factor 19 |
Publications ? help Back to Top | |||
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