PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63193.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 469aa    MW: 53449.6 Da    PI: 8.6891
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63193.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.1e-2371172199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++++
  MLOC_63193.1  71 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDERQ 163
                   99*****************************954.4444.48************************************************..45778 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  MLOC_63193.1 164 QLLLGIRRA 172
                   88***9997 PP
2Auxin_resp119.52.7e-39197280183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  MLOC_63193.1 197 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 280
                   79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-4260200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-4263186IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-2070162No hitNo description
SMARTSM010191.5E-2271173IPR003340B3 DNA binding domain
PfamPF023623.6E-2171172IPR003340B3 DNA binding domain
PROSITE profilePS5086311.88571173IPR003340B3 DNA binding domain
PfamPF065076.6E-34197280IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MQKDVDAHVP NYPNLPSKLI CLLHNITLHA DLETDEVYAR MTLQPVTSYG KEALQLSELA  60
LKQARPQNEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE IQARDLHDNV  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD ERQQLLLGIR RANRQPTNIS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQLSLGM  240
RFRMMFETEE LGTRRYMGTI TGINDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI  300
EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLWKRAMPW LGEEICIKDP QTQNTIMPGL  360
SLVQWMNMNM QQSSSFANTA MQSEYLRSIT NSSMQNIGSS ELSRQLCLQN QLLQQNNMQF  420
NSPKLPQQMQ PNNDLSKAAV PLNQNGMSIK QQEQTQDASN FQRQQQSMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-149230189388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674960.0AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163202.10.0auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A287XG910.0A0A287XG91_HORVV; Auxin response factor
TrEMBLA0A287XGI30.0A0A287XGI3_HORVV; Auxin response factor
TrEMBLA0A287XGI60.0A0A287XGI6_HORVV; Auxin response factor
STRINGMLOC_63193.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]