PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61603.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92170.2 Da    PI: 5.7193
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61603.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-193290357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  MLOC_61603.3 32 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 90
                  5678****************************************************996 PP
2START161.85.1e-511703772204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l ++
  MLOC_61603.3 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYM 265
                   6899******************************************************9999999999.****************9999******** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s++
  MLOC_61603.3 266 QMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 362
                   ************************************9999998888899************************************************ PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k+++a+l++ +
  MLOC_61603.3 363 VVAQKMTTAALRHIR 377
                   ***********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-191390IPR009057Homeodomain-like
PROSITE profilePS5007115.6772791IPR001356Homeobox domain
SMARTSM003894.3E-162995IPR001356Homeobox domain
SuperFamilySSF466892.27E-163193IPR009057Homeodomain-like
CDDcd000867.56E-173292No hitNo description
PfamPF000462.9E-163390IPR001356Homeobox domain
CDDcd146869.03E-684123No hitNo description
PROSITE profilePS5084827.176160388IPR002913START domain
CDDcd088752.64E-73164380No hitNo description
Gene3DG3DSA:3.30.530.201.2E-21168355IPR023393START-like domain
SMARTSM002341.1E-38169379IPR002913START domain
SuperFamilySSF559611.51E-36170381No hitNo description
PfamPF018525.4E-49170377IPR002913START domain
PfamPF086706.1E-49697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ  60
QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV NRKLSAMNKL LMEENERLQK  120
QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS  180
KATGTAVDWV PMPGMKPGPD SFGIVAISHG CRGVAARACG LVNLEPTKIV EILKDRPSWF  240
RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL  300
SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES  360
SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG  420
WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIAPGGVICA KASMLLQSVP PAVLVRFLRE  480
HRSEWADYNF DAYSASALKS SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ  540
ALDEGLLSRD IHLLQFCTGI DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT  600
DGAPTGRTLD LASSLEAGST TLQASGNADD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY  660
VRSIVSAVQR VSMAISPSRS GLNAEQKIIS GFPEAATLAR WICQSYRFHL GVELFRQADE  720
AGESLLRMLW DHEDAILCCS FKEKPVFTFA NEMGINMLET SFVALQDLSL DKIFDEAGRK  780
ALYSEIPKLM EQGFVYLPGG VCLSGMGRHV SFENAIAWKV VGEDNNVHCL AFCFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61603.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174778.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLM0XNE50.0M0XNE5_HORVV; Uncharacterized protein
STRINGTraes_1AL_0BE456AC0.10.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein