PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_61603.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 649aa MW: 71013.4 Da PI: 6.1434 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.4e-19 | 32 | 90 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ rq+kvWFqNrR ++k+ MLOC_61603.2 32 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 90 5678****************************************************996 PP | |||||||
2 | START | 162.5 | 3.1e-51 | 170 | 377 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g g+++l ++ MLOC_61603.2 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYM 265 6899******************************************************9999999999.****************9999******** PP XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS START 97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189 +++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s++ MLOC_61603.2 266 QMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 362 ************************************9999998888899************************************************ PP HHHHHHHHHHTXXXX CS START 190 aegaktwvatlqrqc 204 + ++k+++a+l++ + MLOC_61603.2 363 VVAQKMTTAALRHIR 377 ***********9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 13 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.677 | 27 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-16 | 29 | 95 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.63E-16 | 31 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.08E-17 | 32 | 92 | No hit | No description |
Pfam | PF00046 | 2.1E-16 | 33 | 90 | IPR001356 | Homeobox domain |
CDD | cd14686 | 7.31E-6 | 84 | 123 | No hit | No description |
PROSITE profile | PS50848 | 27.176 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 2.46E-74 | 164 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 6.6E-22 | 168 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 1.1E-38 | 169 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.61E-37 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 3.3E-49 | 170 | 377 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 649 aa Download sequence Send to blast |
MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ 60 QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV NRKLSAMNKL LMEENERLQK 120 QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS 180 KATGTAVDWV PMPGMKPGPD SFGIVAISHG CRGVAARACG LVNLEPTKIV EILKDRPSWF 240 RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL 300 SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES 360 SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRLVL ANDTAIFACA 420 CLGLMIILTP FLCPFRGFND AISGFNDDGW SVMAGDGIED VIIACNSKKI RSNNTAPNAF 480 IAPGGVICAK ASMLLQSVPP AVLVRFLREH RSEWADYNFD AYSASALKSS SCSLPGLRPM 540 RFSGSQIIMP LAHTVENEEI LEVVRLEGQA LDEGLLSRDI HLLQFCTGID EKSMGSCFQL 600 VFAPIDELFP DDAPLISSGF RVIPLDMKTV ECSVSLTYRC SEIQDTTLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_61603.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362009 | 0.0 | AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174778.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A446IU98 | 0.0 | A0A446IU98_TRITD; Uncharacterized protein | ||||
STRING | MLOC_61603.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |