PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_61111.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 598aa MW: 64017.7 Da PI: 7.8868

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_61111.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.3e-08	206	228	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg MLOC_61111.1 206 VPCPNFRRPGGCPSGDNCEFSHG 228 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.2E-9	1	72	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.255	1	71	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.50E-10	1	91	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.3E-11	1	76	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	8.5E-5	31	63	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	13.304	31	66	IPR002110	Ankyrin repeat
Pfam	PF00023	1.6E-7	31	63	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.3E-5	32	47	IPR002110	Ankyrin repeat
PRINTS	PR01415	4.3E-5	50	64	IPR002110	Ankyrin repeat
SMART	SM00356	3.6E-4	202	229	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	202	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	203	231	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-6	205	230	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	206	228	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.2E-4	235	267	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	21	238	261	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MVAATYGSAR VVSLLLGRTG WVDVARRPGG DGFTPLHCAA SGGSCNAVQV VKMLLDAGAD 60 PATADSTGRV PADVVRAPPA SADALGDLEI LLGRRRALAV ATSAASGASS PPLSSSPDDE 120 GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV RPCSRAYSHD 180 WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF ESWLHPTQYR 240 TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA TSSIDMTAAA ALGLLPGSPR 300 HFAPPPGSPS AMNNGGAASA HWLQGSRLRS SFNARDATVE DLGLLLDWES QYLGALCLPP 360 SSRPQPRLST GLSIRPTAIV PTSLEDMYAS EMGMSPRFTN DQGHSAYSPA HKSAILNKLH 420 QQKGLLSPVN TNRMYSPRAL DPAALVQSPI GGMSPRSPRL MEPTSPINAR FGAAVTQREM 480 YEQFSNLNKH QLPSVGSPRN SNAASWGNAG SPMGKVDWGV DGEELDRLRC PDQPGFAEKE 540 PDAPWGRSPN SNRGEMQLGI SGGMASGSAN RPDWNNQADI LDQMAIGAWL EQLQTDQK

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MVAATYGSAR VVSLLLGRTG WVDVARRPGG DGFTPLHCAA SGGSCNAVQV VKMLLDAGAD  60
PATADSTGRV PADVVRAPPA SADALGDLEI LLGRRRALAV ATSAASGASS PPLSSSPDDE  120
GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV RPCSRAYSHD  180
WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF ESWLHPTQYR  240
TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA TSSIDMTAAA ALGLLPGSPR  300
HFAPPPGSPS AMNNGGAASA HWLQGSRLRS SFNARDATVE DLGLLLDWES QYLGALCLPP  360
SSRPQPRLST GLSIRPTAIV PTSLEDMYAS EMGMSPRFTN DQGHSAYSPA HKSAILNKLH  420
QQKGLLSPVN TNRMYSPRAL DPAALVQSPI GGMSPRSPRL MEPTSPINAR FGAAVTQREM  480
YEQFSNLNKH QLPSVGSPRN SNAASWGNAG SPMGKVDWGV DGEELDRLRC PDQPGFAEKE  540
PDAPWGRSPN SNRGEMQLGI SGGMASGSAN RPDWNNQADI LDQMAIGAWL EQLQTDQK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_61111.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357194	0.0	AK357194.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1047P21.
GenBank	AK363392	0.0	AK363392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015B03.
GenBank	AK364612	0.0	AK364612.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026O22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185855.1	0.0	zinc finger CCCH domain-containing protein 50-like
Swissprot	Q84SL2	0.0	C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBL	F2CZY7	0.0	F2CZY7_HORVV; Predicted protein
STRING	MLOC_61111.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-130	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]