PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61071.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 331aa    MW: 35220 Da    PI: 4.5391
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61071.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.5e-383590661
        zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                   +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  MLOC_61071.1 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 90
                  58***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-361789IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543589IPR003851Zinc finger, Dof-type
PfamPF027018.3E-323589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLSSHPHEAA MLPYVPRPPS LLVDRRYSTG AEVAPNCPRC DSPNTKFCYY NNYSLSQPRY  60
FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KSSVRSASDS FSGVRDATFG HGGFPGPLRP  120
DMVLEGMVGN PANPGQAMHD VPTAPDGASI DLAMLYSKFL NNQQPAADGS RVGSVTPESA  180
GGHVDETFDT FSASSDMSPG GVLAPAQFDA SPDGFLEWSR PVSSADPTST ASAATATTML  240
CTDESVQAAL GELNFAMDQS CFDSLGLPTD GAAANLSSWC SIVPSLSTWE EPKYDSLDSF  300
PDDTMSLHDG ILAADHDWTA DCQGLEALYM P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61071.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735270.0AK373527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3033N21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167339.10.0uncharacterized protein LOC109752821
TrEMBLF2EBK20.0F2EBK2_HORVV; Predicted protein
STRINGMLOC_61071.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.16e-38Dof family protein