PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6066.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 482aa MW: 53325.7 Da PI: 6.2678

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6066.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164	5.5e-51	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGf FhP+d elv +yLkkk+ g+k+e ++i+evdiyk+ePwdLp+ +v +++++w+fF+ rd+ky++g r+nrat +gyWk+tgkd+++++ + MLOC_6066.1 9 LPPGFGFHPKDTELVAHYLKKKILGQKIEY-DIIPEVDIYKHEPWDLPAkcNVPTQDNKWHFFAARDRKYPNGARSNRATVAGYWKSTGKDRAIKV-D 104 79**************************.99***********5346667999**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLvf++gr p+g++t+W+mhey + MLOC_6066.1 105 KRTIGTKKTLVFHEGRPPTGKRTEWIMHEYYI 136 99**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-59	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	55.156	9	159	IPR003441	NAC domain
Pfam	PF02365	9.4E-25	10	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
METLRAMALP PGFGFHPKDT ELVAHYLKKK ILGQKIEYDI IPEVDIYKHE PWDLPAKCNV 60 PTQDNKWHFF AARDRKYPNG ARSNRATVAG YWKSTGKDRA IKVDKRTIGT KKTLVFHEGR 120 PPTGKRTEWI MHEYYIDENE CQACPDMKDA FVLCKVTKRI DWTSENGNEV GNNNPQPQQP 180 NVAAILAVSV EQPDTAGSSI IGGELPSDAA TVAIPAHTTP DGDADIQQWL EELIDPSFDP 240 SANTVVDSVS AQLSPDEQNA ESSNIDAMAP KVEQDYASPN QTLADDTDFL LSDDIHSMLY 300 PGSDDFTSWQ HTYFTAADPF SLSNDFMDEF QMKELQLPLE NNGPNLSNEP AVVVRTRHGG 360 TSATSVPPYK AKARLQQRLG RMVTSSSESI NQTIKFVDNN GHLDLMTNVK HQKKHVRDIT 420 SVKQSDAGKS SGNHNNQGFF RGVQRAFRGC SATGLNILVA LCMVGVAAAI LHHGRHRSGI 480 SL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

METLRAMALP PGFGFHPKDT ELVAHYLKKK ILGQKIEYDI IPEVDIYKHE PWDLPAKCNV  60
PTQDNKWHFF AARDRKYPNG ARSNRATVAG YWKSTGKDRA IKVDKRTIGT KKTLVFHEGR  120
PPTGKRTEWI MHEYYIDENE CQACPDMKDA FVLCKVTKRI DWTSENGNEV GNNNPQPQQP  180
NVAAILAVSV EQPDTAGSSI IGGELPSDAA TVAIPAHTTP DGDADIQQWL EELIDPSFDP  240
SANTVVDSVS AQLSPDEQNA ESSNIDAMAP KVEQDYASPN QTLADDTDFL LSDDIHSMLY  300
PGSDDFTSWQ HTYFTAADPF SLSNDFMDEF QMKELQLPLE NNGPNLSNEP AVVVRTRHGG  360
TSATSVPPYK AKARLQQRLG RMVTSSSESI NQTIKFVDNN GHLDLMTNVK HQKKHVRDIT  420
SVKQSDAGKS SGNHNNQGFF RGVQRAFRGC SATGLNILVA LCMVGVAAAI LHHGRHRSGI  480
SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-43	7	162	13	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6066.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU001723	0.0	GU001723.1 Triticum aestivum cultivar Suwon11 NAC-domain transcription factor (NAC8) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191215.1	0.0	NAC domain-containing protein 74-like
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	M0XJN9	0.0	M0XJN9_HORVV; Uncharacterized protein
STRING	MLOC_6066.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	2e-66	NAC domain containing protein 86

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]