PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6062.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 222aa MW: 23818.3 Da PI: 6.7123 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.1 | 6.7e-12 | 106 | 153 | 3 | 50 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e +r rr+ +NRe+ArrsR RK+ ++ eL v+ L + N++L +el+ MLOC_6062.2 106 EERRRRRMVSNRESARRSRMRKQRQLSELWAQVAHLRGANRRLLDELN 153 67899***************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-8 | 104 | 182 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-9 | 105 | 153 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.22 | 106 | 153 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.2E-7 | 108 | 181 | No hit | No description |
SuperFamily | SSF57959 | 1.22E-10 | 108 | 156 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 111 | 126 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 5.31E-15 | 113 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MYHYNNGDVA SFHFLPPPSP SSSFATHHHM NMTLPPQAYF PPSFDPAALL ADDDDVAAAF 60 QFDAILVEEA AHLAGGSGSP SSGSDAGGGN YFQVGGAGPG VGSAEEERRR RRMVSNRESA 120 RRSRMRKQRQ LSELWAQVAH LRGANRRLLD ELNCALRGCA DACRESAQLR DEKAKLNEML 180 EQLLQQSAPE KKAASSPASS NHSSCSSEPC KNSTAAAASS TE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 127 | RRSRMRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00533 | DAP | Transfer from AT5G38800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6062.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004376 | 7e-65 | AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05. | |||
GenBank | AP004557 | 7e-65 | AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08. | |||
GenBank | AP014964 | 7e-65 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 7e-65 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831504 | 7e-65 | CT831504.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148525.1 | 1e-107 | basic leucine zipper 25-like | ||||
TrEMBL | M0XJG4 | 1e-161 | M0XJG4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6062.2 | 1e-162 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38800.1 | 3e-13 | basic leucine-zipper 43 |