PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6060.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19602.7 Da    PI: 10.8917
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6060.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121449540
                 SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
       SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                 ++ +r  t+  Rr+ ++KKA EL +LC+++++v+++
  MLOC_6060.1 14 DSARRRRTYQTRRKNLMKKAGELRILCNTKACVLVY 49
                 6789999***************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-9161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.526162IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-16395IPR002100Transcription factor, MADS-box
PfamPF003193.8E-101451IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARKKVPLRY IGNDSARRRR TYQTRRKNLM KKAGELRILC NTKACVLVYD QGASVPDVVY  60
PSHAEAAAIL NRYKATPNMV QFKKTVSHEE FLTKCVAKFQ YKADKLRRER EDRDIRALLH  120
KAMLGGDLSA EEVARVGSKS GEIHKSLRER IAKTTRQPPV FQPQGPNVTG GAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219RKKVPLRYIGNDSARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166803.14e-56agamous-like MADS-box protein AGL80
TrEMBLA0A287HBS81e-125A0A287HBS8_HORVV; Uncharacterized protein
STRINGMLOC_6060.11e-126(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-18AGAMOUS-like 46