PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 21991.5 Da PI: 10.0747 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.7 | 7.2e-15 | 109 | 155 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + r+ r++kNRe+A rsR+RK+a++ eLe + ++L eN++L k+ + MLOC_60135.1 109 VDRQLRMIKNRESAARSRARKQAYTNELEMELAQLRRENQMLVKREQ 155 679***************************************98755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.0E-7 | 106 | 170 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.691 | 108 | 160 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-12 | 111 | 155 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.31E-10 | 111 | 159 | No hit | No description |
CDD | cd14707 | 9.38E-21 | 111 | 155 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-12 | 111 | 160 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 114 | 128 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEELWKDMSL PSTPAALQSY HIHSPAVAPY HAAAYLAGPV PLPRGPPYTA LTLSSSVEFA 60 FPGGGSSGKP TGSTSSNDYS FGFPSASASG PKSSNNNGKR VQVNAPAAVD RQLRMIKNRE 120 SAARSRARKQ AYTNELEMEL AQLRRENQML VKREQDFINE SSATAAQAVI PDCSSGGGGG 180 RSRSSRPTLH FELEQRQRCR SAPAP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60135.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375836 | 0.0 | AK375836.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107H21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164874.1 | 1e-69 | protein FD-like | ||||
TrEMBL | M0XHR9 | 1e-148 | M0XHR9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_60135.1 | 1e-149 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14602 | 10 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 2e-17 | basic region/leucine zipper motif 27 |