PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60074.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 30883.1 Da PI: 6.05 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl MLOC_60074.6 23 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 77 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.814 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 22 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-31 | 22 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-25 | 24 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.9E-24 | 109 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MESGENNMGS NDGPNSKASL AARQRLRWTD ELHEQFVEAV TQLGGPDRAT PKGVLRIMGT 60 PGLTIYHVKS HLQKYRLAKY IPDSSADGNK ADNKDPGDSL AGLDGSSGMQ ISEALKLQME 120 VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRFGGIK SETPGAGATV TASSDQFPDS 180 ERTDPSTPAP TSESASQGAA FKRDSGSQTE AIKSPCHDEP LLTADSNCHP GSPTLSPKHE 240 RAAKRQRSSD AEFPEAELSL PQHIFESSSG PEFQQCSVPY FSGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60074.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365733 | 0.0 | AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13. | |||
GenBank | AK373855 | 0.0 | AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180683.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180688.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180697.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180704.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_020180710.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 2e-93 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | F2DPB5 | 0.0 | F2DPB5_HORVV; Predicted protein | ||||
STRING | MLOC_60074.6 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 6e-64 | G2-like family protein |