PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Nin-like | ||||||||
Protein Properties | Length: 250aa MW: 28219.6 Da PI: 8.9383 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 87.3 | 1.3e-27 | 124 | 173 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl MLOC_59560.1 124 RVLTFELVSQYFYMPITQAARELNVGLTILKKRCRELGIPRWPHRKLKSL 173 6699********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.667 | 110 | 193 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-22 | 126 | 173 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MPPASGLMGE VFGMIVTCLK RRRSSAVYPS RASVANHCAL STLLFRRAAV CKSSRAAPCL 60 VPCNTGDLDT SFEDDLLRCW EAMEQSDNST EVSGKGLPLP LPCYGEENGS ASNATRADRV 120 RSERVLTFEL VSQYFYMPIT QAARELNVGL TILKKRCREL GIPRWPHRKL KSLRTLINDV 180 EVLQEAGKAD DDGQLRALVE MLEQERRLLE QKPYVELEEK TKRLRQACFK ASYKKRRLLA 240 LEPGEASKYY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164800.1 | 1e-115 | protein RKD4-like | ||||
TrEMBL | A0A287W3I4 | 1e-180 | A0A287W3I4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59560.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-38 | RWP-RK domain-containing protein |