PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59503.7
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 481aa    MW: 51474.2 Da    PI: 4.5182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59503.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11331376555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h+++Er RR++i +++ +L++l+P++      K +K+++L + ++Y+k Lq
  MLOC_59503.7 331 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 376
                   99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.61E-12324380No hitNo description
SuperFamilySSF474591.14E-16324386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.901326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16328385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8331376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MNYSDGSFFP SWPGNSASEN YSFVDGSVES YTEEGSMPTT GYFRARSNQN LTFDEHEQNP  60
AMLANGCLPY NTQTDLLSGE ILSDDKPSNS LVELSQLQNN VCLQNNLIPP GTLQCTSTPG  120
TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVQAVS SASTLCSTFQ NVPSYMEPVS  180
LEAFSFQGMQ NAAMFNNASH SNGNLSVFDE ATMASLHDSK EFLNGSISSL GTGQQSQLAG  240
GGLKAEQQEQ NTMCNIPLPS FVSASQMAVS EAQGALIPSK TTSITHNNKS EYPIPISHSA  300
DVQHKANSGN GNSASAKPRA RARRGQATDP HSIAERLRRE KISERMKNLQ DLVPNSNKAD  360
KSSMLDEIID YVKFLQLQVK VLSMSRLGAP GAVLPLLAES QTEGRSNSPL SSPTTSQGLL  420
DVAGPEDSLV FEQEVIKLME TSITNAMQYL QNKGLCLMPI ALASAISNQK GTSAAAIPPE  480
R
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59503.7
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3636630.0AK363663.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198859.10.0uncharacterized protein LOC109784671
TrEMBLM0XF360.0M0XF36_HORVV; Uncharacterized protein
STRINGMLOC_59503.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-47LJRHL1-like 1