PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59439.9
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 294aa    MW: 33303.4 Da    PI: 7.2623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59439.9genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-1827111999
                   HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + ++++++v+p +fa+++ gk   s+t++le ++g +++v +  + +++r vl++GW+ F +an++ e+D+++F++ g+s+f  +v vf++
  MLOC_59439.9  27 SKSSRHCMVIPERFANHFVGK--MSRTVKLEGPNGIVYDVGV--TEHRNRKVLQSGWEVFLDANEIIEKDSLMFRYRGSSCF--KVAVFDS 111
                   3455667********777767..5679***************..*********************************99***..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-2118119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99919112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-1920114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-1821110No hitNo description
SMARTSM010197.2E-1222112IPR003340B3 DNA binding domain
PfamPF023621.2E-1527111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI  60
VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC  120
FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS  180
EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDGPPK DKYVLPSRSN LADAQKEKID  240
RLLQDIQSRT LAFVAIMRKS NVRPLYPSLV NFLSSFLAHY NPLWSIELIE VFTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59439.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732050.0AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.11e-157B3 domain-containing protein Os03g0619600-like
TrEMBLA0A287NAG30.0A0A287NAG3_HORVV; Uncharacterized protein
STRINGMLOC_59439.80.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-16B3 family protein