PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59439.8
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 527aa    MW: 59664.6 Da    PI: 8.9844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59439.8genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1727111999
                   HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + ++++++v+p +fa+++ gk   s+t++le ++g +++v +  + +++r vl++GW+ F +an++ e+D+++F++ g+s+f  +v vf++
  MLOC_59439.8  27 SKSSRHCMVIPERFANHFVGK--MSRTVKLEGPNGIVYDVGV--TEHRNRKVLQSGWEVFLDANEIIEKDSLMFRYRGSSCF--KVAVFDS 111
                   3455667********777767..5679***************..*********************************99***..9999986 PP
2B335.81.4e-113003821597
                   -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
            B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                    l++ k++a++h   ++es  ++l+   ++++W  +++  ++++ + +++ W++Fv +n+++e D+++F  ++   +f+++v+++
  MLOC_59439.8 300 SLTITKECAAAHF--PHESASVILQRpGESKKWYPRFCKGNGGSIHKIRGEWSDFVCDNHVEEADICIFVSTKGgGRFTFTVHLI 382
                   589*********7..446778999994556*******65555555*************************776558888888876 PP
3B354.42.2e-174565242999
                   -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
            B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                   +k+e  + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++
  MLOC_59439.8 456 PKKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 524
                   3222..3677889*********999999885.999**********************998*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2018119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99919112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1920114IPR015300DNA-binding pseudobarrel domain
CDDcd100179.46E-1821110No hitNo description
SMARTSM010197.2E-1222112IPR003340B3 DNA binding domain
PfamPF023623.3E-1527111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16278383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-16280383IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-15285380No hitNo description
PROSITE profilePS508639.587286385IPR003340B3 DNA binding domain
SMARTSM010190.0073293385IPR003340B3 DNA binding domain
PfamPF023626.6E-10299382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-20419526IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-18421527IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-13425523No hitNo description
SMARTSM010194.4E-7427525IPR003340B3 DNA binding domain
PfamPF023626.5E-16446524IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393462525IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI  60
VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC  120
FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS  180
EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDASGR SYECQSGSSS YSGSTRNTAV  240
MSTPSAESGP PKDKYVLPSR SNLADAQKEK IDRLLQDIQS RTLAFVAIMR KSNVRPLYPS  300
LTITKECAAA HFPHESASVI LQRPGESKKW YPRFCKGNGG SIHKIRGEWS DFVCDNHVEE  360
ADICIFVSTK GGGRFTFTVH LIHSESKAHA CPFVPPYILP KTRFLSPLQK IIVEDKAQAI  420
QLEAHFYVAI MNKINVGVKG HYNLEFGAKY AAVYLPKKEQ TILLQRTGKE WQTQMRIRRG  480
RRRFLEKGWC EFATDNRLQV GDLCLFELKR NRRKLTMIVH IISRDQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1507514LKRNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59439.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732050.0AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171944.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLF2EAN00.0F2EAN0_HORVV; Uncharacterized protein
STRINGMLOC_59439.80.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-15B3 family protein