PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_59439.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 220aa MW: 24731.4 Da PI: 6.5929 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.8e-18 | 27 | 111 | 9 | 99 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++++++v+p +fa+++ gk s+t++le ++g +++v + + +++r vl++GW+ F +an++ e+D+++F++ g+s+f +v vf++ MLOC_59439.6 27 SKSSRHCMVIPERFANHFVGK--MSRTVKLEGPNGIVYDVGV--TEHRNRKVLQSGWEVFLDANEIIEKDSLMFRYRGSSCF--KVAVFDS 111 3455667********777767..5679***************..*********************************99***..9999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-21 | 18 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.999 | 19 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.6E-20 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.49E-19 | 21 | 110 | No hit | No description |
SMART | SM01019 | 7.2E-12 | 22 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-16 | 27 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI 60 VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC 120 FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS 180 EDLSDSPNEH ESSGSDDHTL PKMISTARVK EEQYSDGMAV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_59439.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK373205 | 0.0 | AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171944.1 | 1e-125 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A287NAG3 | 1e-159 | A0A287NAG3_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287NAV4 | 1e-161 | A0A287NAV4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59439.8 | 1e-156 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-17 | B3 family protein |