PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_59439.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 238aa MW: 26655.3 Da PI: 6.5917

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_59439.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	27	111	9	99
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + ++++++v+p +fa+++ gk s+t++le ++g +++v + + +++r vl++GW+ F +an++ e+D+++F++ g+s+f +v vf++ MLOC_59439.5 27 SKSSRHCMVIPERFANHFVGK--MSRTVKLEGPNGIVYDVGV--TEHRNRKVLQSGWEVFLDANEIIEKDSLMFRYRGSSCF--KVAVFDS 111 3455667******777767..5679***********..*****************************99*..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-21	18	119	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.999	19	112	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.9E-20	20	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.66E-19	21	110	No hit	No description
SMART	SM01019	7.2E-12	22	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-16	27	111	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MKDSCQECKR YWNHLHGKVT RFVRRMSKSS RHCMVIPERF ANHFVGKMSR TVKLEGPNGI 60 VYDVGVTEHR NRKVLQSGWE VFLDANEIIE KDSLMFRYRG SSCFKVAVFD SSGCEKTVPC 120 FGIGGTISDQ EPITNSTEMP SSSSDRNTHS SMDRRSDGCQ SESSEHCREL SRTDATSSPS 180 EDLSEDSPNE HESSGSDDHT LPKMISTARV KEEQYSDASG RSYECQSGSS SYSGSTRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_59439.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373205	0.0	AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171944.1	1e-137	B3 domain-containing protein Os03g0619600-like
TrEMBL	A0A287NAS4	1e-175	A0A287NAS4_HORVV; Uncharacterized protein
TrEMBL	A0A287NAU3	1e-176	A0A287NAU3_HORVV; Uncharacterized protein
STRING	MLOC_59439.8	1e-163	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	8e-17	B3 family protein