PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59439.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 83aa MW: 10043.8 Da PI: 10.9182 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.5e-19 | 13 | 80 | 30 | 99 |
..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 k+e + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++ MLOC_59439.12 13 KKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 80 222..4677889*********999999885.999**********************998********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.789 | 1 | 81 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0014 | 2 | 81 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.0E-17 | 4 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-19 | 5 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.31E-13 | 5 | 79 | No hit | No description |
Pfam | PF02362 | 1.8E-17 | 10 | 80 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
EFGAKYAAVY LPKKEQTILL QRTGKEWQTQ MRIRRGRRRF LEKGWCEFAT DNRLQVGDLC 60 LFELKRNRRK LTMIVHIISR DQC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 70 | LKRNRRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59439.12 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373205 | 1e-139 | AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171944.1 | 2e-42 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV22 | 1e-23 | Y3196_ORYSJ; B3 domain-containing protein Os03g0619600 | ||||
TrEMBL | A0A287NAR9 | 2e-53 | A0A287NAR9_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287NAU4 | 8e-55 | A0A287NAU4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59439.8 | 9e-53 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-08 | B3 family protein |
Publications ? help Back to Top | |||
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