PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59439.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27616.2 Da PI: 10.2142 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 5.9e-12 | 13 | 94 | 16 | 97 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 l++ k++a++h ++es ++l+ ++++W +++ ++++ + +++ W++Fv +n+++e D+++F ++ +f+++v+++ MLOC_59439.11 13 LTITKECAAAHF--PHESASVILQRpGESKKWYPRFCKGNGGSIHKIRGEWSDFVCDNHVEEADICIFVSTKGgGRFTFTVHLI 94 899********7..446778999994556*******65555555*************************776558888888876 PP | |||||||
2 | B3 | 56.4 | 5.5e-18 | 168 | 236 | 29 | 99 |
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +k+e + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++ MLOC_59439.11 168 PKKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 236 3222..3677889*********999999885.999**********************998********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.03E-14 | 1 | 92 | No hit | No description |
SuperFamily | SSF101936 | 1.45E-14 | 1 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.925 | 1 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-14 | 1 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0073 | 5 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-10 | 13 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-20 | 131 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-19 | 133 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.13E-14 | 137 | 235 | No hit | No description |
SMART | SM01019 | 4.4E-7 | 139 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-16 | 158 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 174 | 237 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRKSNVRPLY PSLTITKECA AAHFPHESAS VILQRPGESK KWYPRFCKGN GGSIHKIRGE 60 WSDFVCDNHV EEADICIFVS TKGGGRFTFT VHLIHSESKA HACPFVPPYI LPKTRFLSPL 120 QKIIVEDKAQ AIQLEAHFYV AIMNKINVGV KGHYNLEFGA KYAAVYLPKK EQTILLQRTG 180 KEWQTQMRIR RGRRRFLEKG WCEFATDNRL QVGDLCLFEL KRNRRKLTMI VHIISRDQC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 226 | LKRNRRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59439.11 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373205 | 0.0 | AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171944.1 | 1e-138 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV21 | 3e-56 | Y3982_ORYSJ; B3 domain-containing protein Os03g0619800 | ||||
TrEMBL | A0A287NAR4 | 0.0 | A0A287NAR4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59439.8 | 1e-179 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 2e-07 | B3 family protein |