PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59439.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29413.4 Da PI: 9.3352 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.5 | 1.7e-11 | 30 | 110 | 17 | 97 |
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 ++ k++a++h ++es ++l+ ++++W +++ ++++ + +++ W++Fv +n+++e D+++F ++ +f+++v+++ MLOC_59439.10 30 TITKECAAAHF--PHESASVILQRpGESKKWYPRFCKGNGGSIHKIRGEWSDFVCDNHVEEADICIFVSTKGgGRFTFTVHLI 110 79999999997..446778999994556*******65555555*************************776558888888876 PP | |||||||
2 | B3 | 56.2 | 6.3e-18 | 184 | 252 | 29 | 99 |
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +k+e + +l +++g++W+ ++++r++++r+ l+kGW eF+ +n+L++gD ++F+l+++ ++ ++ v+++++ MLOC_59439.10 184 PKKE--QTILLQRTGKEWQTQMRIRRGRRRF-LEKGWCEFATDNRLQVGDLCLFELKRNrRKLTMIVHIISR 252 3222..3677889*********999999885.999**********************998********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.38 | 19 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-13 | 28 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.69E-12 | 30 | 108 | No hit | No description |
SuperFamily | SSF101936 | 1.82E-13 | 30 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.0E-10 | 30 | 111 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.037 | 43 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 147 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-19 | 149 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-13 | 153 | 251 | No hit | No description |
SMART | SM01019 | 4.4E-7 | 155 | 253 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-16 | 174 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.393 | 190 | 253 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
QLKHILAEFC ILFICLFVYG ITLCPICDQT ITKECAAAHF PHESASVILQ RPGESKKWYP 60 RFCKGNGGSI HKIRGEWSDF VCDNHVEEAD ICIFVSTKGG GRFTFTVHLI HSESKAHACP 120 FVPPYILPKT RFLSPLQKII VEDKAQAIQL EAHFYVAIMN KINVGVKGHY NLEFGAKYAA 180 VYLPKKEQTI LLQRTGKEWQ TQMRIRRGRR RFLEKGWCEF ATDNRLQVGD LCLFELKRNR 240 RKLTMIVHII SRDQC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 242 | LKRNRRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59439.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373205 | 0.0 | AK373205.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023K17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171944.1 | 1e-130 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q6AV21 | 1e-52 | Y3982_ORYSJ; B3 domain-containing protein Os03g0619800 | ||||
TrEMBL | A0A287NAR4 | 1e-170 | A0A287NAR4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59439.8 | 1e-167 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 6e-07 | B3 family protein |