PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58641.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 295aa    MW: 32511.1 Da    PI: 4.3923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58641.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19123172255
           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   +++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ kl+g
  MLOC_58641.2 123 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIKLRG 172
                   69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.5E-12123172IPR001471AP2/ERF domain
PROSITE profilePS5103223.393123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-29123182IPR001471AP2/ERF domain
SMARTSM003801.7E-35123186IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-21123181IPR016177DNA-binding domain
PRINTSPR003673.4E-10124135IPR001471AP2/ERF domain
CDDcd000184.19E-25131182No hitNo description
PRINTSPR003673.4E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MWPMEEEFFM AVKRTEHVEV TSRSLAASAT GMEGFGGGVE QPKMVRVFCD DFDATDSSSD  60
EEDGERRRVK RYVQEIRLQP AVQVKVEESA PVAKAASATA TATRPRVMVP VRKRKAEAGG  120
ERRFRGVRRR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA KVYDSAAIKL RGPDATVNFQ  180
QSEDGEDGDT AKKPSSSSST AETDESSGVF GCSFSGDDFA GELAPLYSDF DLLSDFAEPP  240
MDFLSNLPEP AFAFTSDCSS SAFQPCPPSP AALQQADEFF QDITDLFQID PLPVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191231791471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130RKAEAGGERRFRGVRRRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58641.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690080.0AK369008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198992.11e-165ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUE32e-40CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLF2DYN91e-177F2DYN9_HORVV; Predicted protein
STRINGMLOC_58641.11e-178(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-30cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]