PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58529.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 259aa MW: 27460.3 Da PI: 9.9134 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 64.2 | 2.3e-20 | 178 | 240 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+k+++rkq+NRe+ArrsR+RK+ae ee + +++ L++eN++Lk+el++l++++++l+se+ MLOC_58529.8 178 EREVKKQKRKQSNRESARRSRLRKQAEWEEVASRADLLKQENSSLKEELKQLQEKCDSLTSEN 240 799**********************************************************98 PP | |||||||
2 | bZIP_1 | 19.8 | 1.7e-06 | 223 | 250 | 25 | 52 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleel 52 k+e+++L+ek+++L++eN++L ++l+ MLOC_58529.8 223 KEELKQLQEKCDSLTSENTSLHEKLKAV 250 799*******************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 5.4E-16 | 18 | 146 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-15 | 173 | 236 | No hit | No description |
Pfam | PF00170 | 2.6E-18 | 178 | 240 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.2E-20 | 178 | 242 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.461 | 180 | 243 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.44E-10 | 181 | 237 | No hit | No description |
CDD | cd14702 | 7.58E-19 | 183 | 234 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 185 | 200 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
TSGAGGSETD KSNKNKRKTP LKRSKGSLGS LDVVTVKDKT PPPKSLVSSS NEGSSQSESG 60 SGSYSGGSST NSKSGSQTKD GSEHGPANDA SNKGVTAQGT AVEPTQVSSG PVVLNPMMPY 120 WPVPPPMPGQ ATGVNMGMDY WGAPTSVPMH GKAVAAPTSA PSSNSRDIVL SDPVIQDERE 180 VKKQKRKQSN RESARRSRLR KQAEWEEVAS RADLLKQENS SLKEELKQLQ EKCDSLTSEN 240 TSLHEKLKAV DSEKPNGNL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 200 | RRSRLRK |
2 | 194 | 201 | RRSRLRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58529.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252480 | 0.0 | AK252480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf155l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189439.1 | 1e-142 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189441.1 | 1e-142 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189442.1 | 1e-142 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189443.1 | 1e-142 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189444.1 | 1e-142 | bZIP transcription factor 16-like isoform X2 | ||||
TrEMBL | A0A287PCY2 | 0.0 | A0A287PCY2_HORVV; Uncharacterized protein | ||||
TrEMBL | M0XBA3 | 0.0 | M0XBA3_HORVV; Uncharacterized protein | ||||
TrEMBL | M0XBA4 | 0.0 | M0XBA4_HORVV; Uncharacterized protein | ||||
TrEMBL | M0XBA6 | 0.0 | M0XBA6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_58529.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 4e-42 | basic region/leucine zipper transcription factor 16 |