PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58529.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 40706.1 Da PI: 9.6129 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 63.4 | 4.3e-20 | 300 | 362 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+k+++rkq+NRe+ArrsR+RK+ae ee + +++ L++eN++Lk+el++l++++++l+se+ MLOC_58529.7 300 EREVKKQKRKQSNRESARRSRLRKQAEWEEVASRADLLKQENSSLKEELKQLQEKCDSLTSEN 362 799**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.4E-28 | 1 | 101 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.3E-15 | 140 | 268 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.9E-15 | 295 | 359 | No hit | No description |
Pfam | PF00170 | 3.9E-18 | 300 | 362 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.2E-20 | 300 | 364 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.461 | 302 | 365 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-9 | 303 | 359 | No hit | No description |
CDD | cd14702 | 4.61E-22 | 305 | 356 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 307 | 322 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGKGDVATRS KSQKSSTVQN EQSTPTNPPT AYPDWSQFQA YYNVPGTAQM TPPAYFHSTV 60 APSPQGHPYM WGPQMMPPYG TPPPYATMYA QGTPYQQAPM PPGSHPYSPY PVQAPNGTVQ 120 TPTSGAGGSE TDKSNKNKRK TPLKRSKGSL GSLDVVTVKD KTPPPKSLVS SSNEGSSQSE 180 SGSGSYSGGS STNSKSGSQT KDGSEHGPAN DASNKGVTAQ GTAVEPTQVS SGPVVLNPMM 240 PYWPVPPPMP GQATGVNMGM DYWGAPTSVP MHGKAVAAPT SAPSSNSRDI VLSDPVIQDE 300 REVKKQKRKQ SNRESARRSR LRKQAEWEEV ASRADLLKQE NSSLKEELKQ LQEKCDSLTS 360 ENTSLHEKLK AVDSEKPNGN L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 322 | RRSRLRK |
2 | 316 | 323 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58529.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252480 | 0.0 | AK252480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf155l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189439.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189441.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189442.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Refseq | XP_020189443.1 | 0.0 | bZIP transcription factor 16-like isoform X1 | ||||
Swissprot | Q501B2 | 1e-82 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | M0XBA4 | 0.0 | M0XBA4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_58529.3 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 2e-61 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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