PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58529.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 361aa    MW: 38626.8 Da    PI: 9.6644
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58529.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.54e-20280342163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+e+k+++rkq+NRe+ArrsR+RK+ae ee + +++ L++eN++Lk+el++l++++++l+se+
  MLOC_58529.4 280 EREVKKQKRKQSNRESARRSRLRKQAEWEEVASRADLLKQENSSLKEELKQLQEKCDSLTSEN 342
                   799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.7E-291101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-15120248No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-15275339No hitNo description
PfamPF001704.1E-18280342IPR004827Basic-leucine zipper domain
SMARTSM003386.2E-20280344IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.461282345IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-10283339No hitNo description
CDDcd147021.66E-21285336No hitNo description
PROSITE patternPS000360287302IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSTVQN EQSTPTNPPT AYPDWSQFQA YYNVPGTAQM TPPAYFHSTV  60
APSPQGHPYM WGPQMMPPYG TPPPYATMYA QGTPYQQAPM PPTSGAGGSE TDKSNKNKRK  120
TPLKRSKGSL GSLDVVTVKD KTPPPKSLVS SSNEGSSQSE SGSGSYSGGS STNSKSGSQT  180
KDGSEHGPAN DASNKGVTAQ GTAVEPTQVS SGPVVLNPMM PYWPVPPPMP GQATGVNMGM  240
DYWGAPTSVP MHGKAVAAPT SAPSSNSRDI VLSDPVIQDE REVKKQKRKQ SNRESARRSR  300
LRKQAEWEEV ASRADLLKQE NSSLKEELKQ LQEKCDSLTS ENTSLHEKLK AVDSEKPNGN  360
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296302RRSRLRK
2296303RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58529.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2524800.0AK252480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf155l09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189444.10.0bZIP transcription factor 16-like isoform X2
SwissprotQ501B21e-70BZP16_ARATH; bZIP transcription factor 16
TrEMBLM0XBA60.0M0XBA6_HORVV; Uncharacterized protein
STRINGMLOC_58529.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.17e-50basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]