PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58529.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 381aa    MW: 40706.1 Da    PI: 9.6129
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58529.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.44.3e-20300362163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+e+k+++rkq+NRe+ArrsR+RK+ae ee + +++ L++eN++Lk+el++l++++++l+se+
  MLOC_58529.2 300 EREVKKQKRKQSNRESARRSRLRKQAEWEEVASRADLLKQENSSLKEELKQLQEKCDSLTSEN 362
                   799**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-281101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-15140268No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-15295359No hitNo description
PfamPF001703.9E-18300362IPR004827Basic-leucine zipper domain
SMARTSM003386.2E-20300364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.461302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-9303359No hitNo description
CDDcd147024.61E-22305356No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSTVQN EQSTPTNPPT AYPDWSQFQA YYNVPGTAQM TPPAYFHSTV  60
APSPQGHPYM WGPQMMPPYG TPPPYATMYA QGTPYQQAPM PPGSHPYSPY PVQAPNGTVQ  120
TPTSGAGGSE TDKSNKNKRK TPLKRSKGSL GSLDVVTVKD KTPPPKSLVS SSNEGSSQSE  180
SGSGSYSGGS STNSKSGSQT KDGSEHGPAN DASNKGVTAQ GTAVEPTQVS SGPVVLNPMM  240
PYWPVPPPMP GQATGVNMGM DYWGAPTSVP MHGKAVAAPT SAPSSNSRDI VLSDPVIQDE  300
REVKKQKRKQ SNRESARRSR LRKQAEWEEV ASRADLLKQE NSSLKEELKQ LQEKCDSLTS  360
ENTSLHEKLK AVDSEKPNGN L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58529.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2524800.0AK252480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf155l09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189439.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_020189441.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_020189442.10.0bZIP transcription factor 16-like isoform X1
RefseqXP_020189443.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-82BZP16_ARATH; bZIP transcription factor 16
TrEMBLM0XBA40.0M0XBA4_HORVV; Uncharacterized protein
STRINGMLOC_58529.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.12e-61basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]