PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_58500.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 578aa MW: 60953.8 Da PI: 6.7199

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_58500.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.8	6.5e-15	128	189	2	63
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ MLOC_58500.1 128 EDVKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSTRISCVTAENAALKQQL 189 678********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-14	127	191	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-13	128	189	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	129	192	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.06E-13	130	189	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-16	131	190	No hit	No description
CDD	cd14704	4.87E-21	132	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAIAEASPFA DLPFPDDLPE FPHGPGGVGD DAFGLDGFNL DDLDIDFDFD LDLDLLPTDD 60 VQLPSSPPPL ATSSSSAGSP GGGGGGDSSS GSGGGADGGL KNDESSETSS RSASAGSDGK 120 ARDGVEGEDV KRRARLVRNR ESAHLSRQRK KQYVEELEGK VKAMQATIAD LSTRISCVTA 180 ENAALKQQLA GAGGAGVPPP LPMYPGLYPL PPPWMHPAYA MGARGSQVPL MPIPRLKTKQ 240 PASAAAEPPA KKSRKTKKVA SVSLLGLLFL MMLCGCLVPA VNRMYGAVDS REGIVLGPSQ 300 SRHGRVLAVD GPRDSVSEGV DSELPHNSSQ TLPVLLYIPR NGKHVKINGN LVIQSVVASE 360 KASSRMCHSD GKSSCNQGQE DTSLAIPGHV AQLNSGEVME SAKAIKNKLM ALPAGDGSIY 420 REDDELLPQW FSEAMSGPML SSGMCTEVFQ FDISPTTIVP VYSSAMPNTS HNSTENVPSS 480 QSHKVKNRRI LHSMAIPLKG STSNHTDHLK AHPKNESFAG NKPASSVVVS VLADPRVDAD 540 GRISSKSLSR IFVVVLVDSV KYVTYSCVLP FKTHSPHL

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAIAEASPFA DLPFPDDLPE FPHGPGGVGD DAFGLDGFNL DDLDIDFDFD LDLDLLPTDD  60
VQLPSSPPPL ATSSSSAGSP GGGGGGDSSS GSGGGADGGL KNDESSETSS RSASAGSDGK  120
ARDGVEGEDV KRRARLVRNR ESAHLSRQRK KQYVEELEGK VKAMQATIAD LSTRISCVTA  180
ENAALKQQLA GAGGAGVPPP LPMYPGLYPL PPPWMHPAYA MGARGSQVPL MPIPRLKTKQ  240
PASAAAEPPA KKSRKTKKVA SVSLLGLLFL MMLCGCLVPA VNRMYGAVDS REGIVLGPSQ  300
SRHGRVLAVD GPRDSVSEGV DSELPHNSSQ TLPVLLYIPR NGKHVKINGN LVIQSVVASE  360
KASSRMCHSD GKSSCNQGQE DTSLAIPGHV AQLNSGEVME SAKAIKNKLM ALPAGDGSIY  420
REDDELLPQW FSEAMSGPML SSGMCTEVFQ FDISPTTIVP VYSSAMPNTS HNSTENVPSS  480
QSHKVKNRRI LHSMAIPLKG STSNHTDHLK AHPKNESFAG NKPASSVVVS VLADPRVDAD  540
GRISSKSLSR IFVVVLVDSV KYVTYSCVLP FKTHSPHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_58500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359129	0.0	AK359129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090D13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149137.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	F2D5G9	0.0	F2D5G9_HORVV; Predicted protein
STRING	MLOC_58500.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	6e-78	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]