PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58439.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 418aa    MW: 44486.8 Da    PI: 6.2616
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58439.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.81.5e-1466147286
      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+ + +       ++p+fd+l+
  MLOC_58439.1  66 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKAKSDS-------SWPFFDRLD 147
                   *************************************87889976333778***************9998886.......5*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2364148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDGAASPS PSPSQSPSRS PSPLPIADPV TVAAVPPGQL ALAIPIHKHG PSNSGGGGGG  60
GREDAWSDGA TSTLIDAWGE RFVALGRGSL RHPQWQEVAE VVSSRDGYSK PPKSDVQCKN  120
RIDTLKKKYK VEKAKSDSSW PFFDRLDFLL APVQKLGCSS GGAAGNSGSS NPSNRGVAPM  180
APRVNFPQRT RTAFPSSAMK RRLPSLPQAS ASSESSDGFP PEPLAEAVNG KRQSLEESAN  240
GADSSDRAQG LRDLAQAIRR LGQAYERVEF SKGEHELRME RNRLDAAREL EDQRVQFFLK  300
MQMEISKANN GAPLAVALAA AAMVGNSASI AADGNSTAAA DGNGSRRASM ATDVMASSNH  360
HVRYRVKDDR HHHASQRPSY LYDQNNAAAV DGRGTGTGSD SGNKEDEEEI EDEEEESQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632020.0AK363202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013H02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172601.10.0trihelix transcription factor ASIL1-like
TrEMBLF2DH350.0F2DH35_HORVV; Predicted protein
STRINGMLOC_58439.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-42sequence-specific DNA binding transcription factors