PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 405aa MW: 43822.7 Da PI: 5.7235 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.2 | 1.9e-50 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdee++++yL +k + ++ +++ evd++++eP+dLp k++ +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd+e+++ + MLOC_5832.1 22 LPPGFRFHPTDEEIITCYLLRKFLDPSFVS-RAVGEVDLNSCEPRDLPGKANMGEKEWYFFVHKDLKYPTGSRANRATKEGYWKATGKDREIFKPrAR 118 79*************************888.88***************99999****************************************98677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 elvg+kktLvfy+grap+g k++Wvmhe+rl MLOC_5832.1 119 ELVGMKKTLVFYTGRAPRGAKSEWVMHEFRL 149 88***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-58 | 20 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.362 | 22 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-26 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MVESIAAGAG SEEQGRGGGL SLPPGFRFHP TDEEIITCYL LRKFLDPSFV SRAVGEVDLN 60 SCEPRDLPGK ANMGEKEWYF FVHKDLKYPT GSRANRATKE GYWKATGKDR EIFKPRAREL 120 VGMKKTLVFY TGRAPRGAKS EWVMHEFRLQ GKSRDQTMNN PKDEWVVCKV FNKKGEAKAA 180 RDADVDAEYS AVTTPNASSV VDAGEGAGDF TDSMFTIDPL YIPNSDEYTS NQLPAETTTT 240 TNTNGDPPPY NADYYYPSVP TTAGSFNVMS NYSLTNAPSN AQTATAMASS VPATSGSSWQ 300 HMLMNTAPHG GMVMGRRSYD VNLHEQQAIM VRALGGAVGA QNFGEPANGL QLPSSAVTTG 360 NVLPQQGKLG SYDDGGEFPY GNYDLASAAM NGRPAAANNP GARFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-49 | 20 | 178 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-49 | 20 | 178 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5832.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371156 | 0.0 | AK371156.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2126K19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166976.1 | 0.0 | NAC domain-containing protein 77-like | ||||
Refseq | XP_020166977.1 | 0.0 | NAC domain-containing protein 77-like | ||||
Swissprot | Q5CD17 | 6e-92 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | F2E4T2 | 0.0 | F2E4T2_HORVV; Predicted protein | ||||
STRING | MLOC_5832.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 3e-72 | NAC family protein |