PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58296.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 288aa    MW: 33075.3 Da    PI: 7.9961
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58296.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.95.9e-1299178190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   +fYn Y+ e+GF ++  + +++  ++  t ++ vC + gk+++ +++         +  ++C a ++++ + d+ w +++++ eHnH +a
  MLOC_58296.1  99 DFYNLYSWEIGFGIKYGQCRRN-VEKCKTAQDIVCGCAGKPRRVNSH---------SVCCQCPAFIRLHHTPDHGWFIHDVKYEHNHGMA 178
                   6*******************99.5666899*********99886655.........99*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-799178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSIDIGSHSD GDFNNKAIPE FFNGADGDDI EEHGTKVQPN PSPWRQRVRL GKIPDRRATS  60
SGRVSALENS MKKYADKKSE FVVKPEISQE FDSLAEAYDF YNLYSWEIGF GIKYGQCRRN  120
VEKCKTAQDI VCGCAGKPRR VNSHSVCCQC PAFIRLHHTP DHGWFIHDVK YEHNHGMAQI  180
CGEKLHWASH RHIDAHAKDI VMHLRNNNIS LSKTFGVIAS FFGDMQNLPF NKRSLRYLCK  240
RMNQQQGDDD IRKTIQLFSE LKEKDPNFVD SVLVDDERKI RALMWTDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198214.12e-94protein FAR1-RELATED SEQUENCE 11-like isoform X2
TrEMBLA0A287PR630.0A0A287PR63_HORVV; Uncharacterized protein
STRINGMLOC_58296.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.16e-11FAR1-related sequence 11