PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58027.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 243aa    MW: 26486.6 Da    PI: 8.0147
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58027.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.71.3e-13138190355
                   XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                   + +r rr+ +NRe+ArrsR+RK a++  Le  v++L++e  +L k+l e +++
  MLOC_58027.1 138 DTRRIRRMVSNRESARRSRRRKHAQLTDLELQVEQLKNESATLFKQLTEANQQ 190
                   56899***************************************777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.6E-13136200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.726138190IPR004827Basic-leucine zipper domain
PfamPF001703.0E-11139190IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-10140191No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-12140191No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKKCASELEL EAFIRQHLAA AEAQRGRPGH GPDDDAGFGE HPSFSPGAGL PGLCFGDSQN  60
ALELQESNAG HLWWSDGLRA PQHHAVPAPT QSQTAAISAS PRETISGNQA LETESDSDSE  120
SLVEIGGGRC KRSGKSSDTR RIRRMVSNRE SARRSRRRKH AQLTDLELQV EQLKNESATL  180
FKQLTEANQQ FTTAVTDNRI LKSDVETLRI KVKMAEDMVA RGAVSCGLGQ QLGLAPFLNS  240
RKM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3613380.0AK361338.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1138D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167700.11e-152basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-61RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLF2DBS41e-178F2DBS4_HORVV; Predicted protein
STRINGMLOC_58027.41e-162(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-27basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]