PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_58019.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 676aa    MW: 73309.9 Da    PI: 6.5503
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_58019.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32276332259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+++Hnh+
  MLOC_58019.2 276 EDGYNWRKYGQKQVKSSEHPRSYYKCTHPDCPVKKKVERSQ-DGQITEIVYKSSHNHP 332
                   7****************************************.***************7 PP
2WRKY1048.1e-33488546159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  MLOC_58019.2 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 546
                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29264334IPR003657WRKY domain
PROSITE profilePS5081123.227270334IPR003657WRKY domain
SuperFamilySSF1182907.59E-26271334IPR003657WRKY domain
SMARTSM007741.8E-34275333IPR003657WRKY domain
PfamPF031064.9E-25276332IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37473548IPR003657WRKY domain
SuperFamilySSF1182906.28E-29480548IPR003657WRKY domain
PROSITE profilePS5081137.883483548IPR003657WRKY domain
SMARTSM007743.3E-38488547IPR003657WRKY domain
PfamPF031062.7E-25489546IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAGTSDRGSL MEDWMAMPPT PSPRTLMSSF LNEDFSSGQF SNFFGEHVSN KPHDQSEKRG  60
ELVDLREQVP AQPPTAMPQK DFSLQPNSFN ANQKSNPQGS LAERRASRAG FSIPKIDTSR  120
VGSSTVIRSP IAIPPGLSPT TLLESPVFLY NSMAQPSPTT GKLFVASAAN STMPPDSTFS  180
NDVFSFQPHS GPTSYSNVEK GYNVCHQNQS MSNMHQQGSS LQSSFTAVKD SADEAIVKPK  240
TSDSMFSDNH TSEEQEENEE DQNEEYSSAT NSNPGEDGYN WRKYGQKQVK SSEHPRSYYK  300
CTHPDCPVKK KVERSQDGQI TEIVYKSSHN HPLPPPNRRS GIPSSQINDP QVHVLERPGL  360
HAGLNTASLW ENGKSECIQD AQGVEGRSAA CPPVSAYGDT SIMESQDAAD VSSTLSNEID  420
RATQGTISLD CDGGEDETES KRRKLDALAA VTLPTATTTS SIDMVAAASR AVREPRVVVQ  480
TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHQGCS VRKHVERASH DLKSVITTYE  540
GKHNHEVPAA RNSGNGGSGS GSAQPSAPQA NISHRRQEQA QGSYPQFGGA TPFGSFGLPP  600
RGHLGAAGNF HFGMGPPGMS MPPMPAARHP PSMMQGYPGL MMQEGQMKPE PDQQSGFASA  660
SAYQQMMGRP PFGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36276549878Probable WRKY transcription factor 4
2lex_A8e-36276549878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_58019.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3621580.0AK362158.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200291.10.0probable WRKY transcription factor 2
TrEMBLM0X9150.0M0X915_HORVV; Uncharacterized protein
STRINGMLOC_58019.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-111WRKY DNA-binding protein 2