PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56963.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GATA | ||||||||
Protein Properties | Length: 405aa MW: 42984.3 Da PI: 4.9726 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.1 | 5e-18 | 325 | 358 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y++ + MLOC_56963.3 325 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 358 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.62E-14 | 318 | 381 | No hit | No description |
SMART | SM00401 | 1.9E-16 | 319 | 369 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.332 | 319 | 355 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.3E-14 | 323 | 356 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.35E-14 | 324 | 381 | No hit | No description |
Pfam | PF00320 | 1.1E-15 | 325 | 358 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 325 | 350 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MASGRFMEEM MREHEQSLLE ASCGGLFDHI EDLLDFPKED SPEDVLLLDA PVPDSPLAAC 60 VLAGVPPPPP ASLEQQHAAS LMAPPPPPAG DHSAAFLGAL GDTHIGTCDE LDMDMAQLEW 120 LSGLFDDTSI PHEPAFACAA PIIRASALSA NAGVVLPDKM EDALFRSSSP TSVLEDGANN 180 VNVNMNNNSG GSSASSTSSS ASSSSESFSG SGRPWSVPLS PRPEPPVLVI PARARSKRSR 240 ASAFPTAIRA AVPAPEATIL VPTPMFSSTS SYSEEPECIA ESNSQPKKKK KAKRPTPPVT 300 SDAEGDADYE EGGGAALPAG EVRRCTHCQI EKTPQWRAGP LGPKTLCNAC GVRYKSGRLF 360 PEYRPAASPT FVPAIHSNSH KKVVEMRQKV EPKGDDLLQF IRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56963.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356685 | 0.0 | AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165199.1 | 0.0 | GATA transcription factor 11-like | ||||
Refseq | XP_020165203.1 | 0.0 | GATA transcription factor 11-like | ||||
TrEMBL | A0A287V391 | 0.0 | A0A287V391_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56963.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-37 | GATA family protein |