PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 40826.6 Da PI: 6.682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.2 | 1.1e-51 | 33 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdee++++y +kv ++ + + +i+ v+++k+ePw+Lp+k+k +e+ewyf+s++d+ky+tg r+nrat+ gyWkatgkdke+++ MLOC_56943.1 33 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVA-AAIEVVNLNKYEPWELPEKAKMGENEWYFYSRKDRKYPTGIRTNRATDVGYWKATGKDKEIFDPPL 128 79*************************998.78***************99999******************************************** PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l+g+kktLvfykgrap+gekt+Wvmheyr+ MLOC_56943.1 129 TLIGMKKTLVFYKGRAPRGEKTNWVMHEYRI 159 *****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-59 | 20 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.254 | 33 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MVASNISITL ESIAEKASTM TDHLQVQQQA LELPPGFRFH PTDEEIIKFY VVPKVLDEAF 60 VAAAIEVVNL NKYEPWELPE KAKMGENEWY FYSRKDRKYP TGIRTNRATD VGYWKATGKD 120 KEIFDPPLTL IGMKKTLVFY KGRAPRGEKT NWVMHEYRIE SSKQLISNST TATSRISTTK 180 AASKWVVCRI FHKSTGLKKM VMPSYDMPMS MAAEHQHDFV GLDTLPPLMD YDMSSTLAHP 240 PLFPGATSYQ LHNVESGSSM MGSVALPMMN DHYYGNHHHQ VMAAPTLPLS LYQHQQQHQQ 300 MMIHMGADQG FMVGAEPGSG MSSMLSQEDA VAGLRNNYPG NTTATAVGET SWMNMGMDDI 360 WQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-49 | 28 | 199 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56943.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197198.1 | 0.0 | NAC domain-containing protein 92-like isoform X2 | ||||
TrEMBL | A0A287Y2B9 | 0.0 | A0A287Y2B9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56943.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 2e-75 | NAC domain containing protein 38 |