PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 225aa MW: 24056.3 Da PI: 10.5298 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 6.8e-27 | 139 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +dD ++WrKYGqK++kgs++pr+YY+C+s C+++k v+rs +p+++++tY ++H h MLOC_56822.1 139 VDDLWAWRKYGQKPIKGSPHPRAYYKCSSLrACTARKLVDRSPAEPEALIVTYIDDHCHA 198 58**************************998**************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.451 | 134 | 200 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.0E-26 | 135 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-23 | 136 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-30 | 139 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-21 | 140 | 197 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDSGDWGLEA VVRSCGGSTV VPGSEAEPEP PAARARRGVA ARVEFVGQRM KVAASSSLYD 60 VLEVPQPPFS ITPSSASHER SMFFSLLSAS TSRQTLPGRK QAGRKPGAGA PTPRRPKRSK 120 KNVVRLVPVA DGGVNNSTVD DLWAWRKYGQ KPIKGSPHPR AYYKCSSLRA CTARKLVDRS 180 PAEPEALIVT YIDDHCHAVP VLINTLAGTA HHPPKSPRGT TASGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-15 | 139 | 200 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-15 | 139 | 200 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180611.1 | 2e-76 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A287PVK5 | 1e-163 | A0A287PVK5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56822.1 | 1e-163 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45050.2 | 3e-28 | Disease resistance protein (TIR-NBS-LRR class) |