PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_56419.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 1008aa MW: 115208 Da PI: 6.3677

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_56419.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.2	1.3e-18	112	217	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek.dgkwevt 79 Y++YA ++GF+ ++++ ++ +g +++tf C++ gk++e +ek+ r+++ ++tgCka+l+++ ++ +++w+v+ MLOC_56419.2 112 LYKAYAFRMGFHAVRRTCHNY--EGIRYRSTFSCTQAGKSREGAAPsevpgaryplrnkrgaatREKRARRTTAEKTGCKAMLVIRDKRvNDRWKVE 206 7*********999998887..7889*********99988899**********9877777888999********999*** PP FAR1 80 kleleHnHela 90 ++l+HnH+++ MLOC_56419.2 207 FVDLDHNHPCT 217 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-16	112	217	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-22	344	438	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.495	626	662	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0029	637	664	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1008 aa Download sequence Send to blast
MGEGSERPPH SRPTRAQNPS CEEEEEEEED AAATSRVKDE IADDLNADPA EDEDEEVVVE 60 EGEDEVLVAS DDDDGAADGA GGDEDFVPRT LEEALVPRVG TVFDSVDEAF SLYKAYAFRM 120 GFHAVRRTCH NYEGIRYRST FSCTQAGKSR EGAAPSEVPG ARYPLRNKRG AATREKRARR 180 TTAEKTGCKA MLVIRDKRVN DRWKVEFVDL DHNHPCTPDM VRFLKAYREM PDSAKKKAKI 240 TREMDEMVEK SLSEIAETRK FPSRPKRSVS GGAAVGGLRF NRTDSFVQRF GDEDLIAVKK 300 FIEMMQEKKP NFIHSWDLDQ ESRLKNFFWT DLRSQAQYCY FGDVISLDVM YLQHSRASLP 360 LATLLGVNNH GHLVLLGCGL LSKDSKENYV WLLKRWLSCM NGKPPEAITT SYSDVVAEAV 420 AEVLPDSRHR FCFWHILKKL QENVGRTHEK EAISLRFKEV VYDTVTLTDF EKEWEAMVEH 480 YKLKDNEWFS ALYSCRKQWA PGYVNHSFWA GTSAIRKVEK PDPYFDGVVT SKTTLPVFLE 540 QYETTLRGKL EREAYDDLRS YYSRLTLLSG LPFEEQLVKL YTVPMFQAFQ DEIKQLMHVI 600 CKEVDRSGNS ITYMASELIQ GKKVDYTVVY NNSDKDVWCI CRSFPSRGIL CSHALSVLKQ 660 ENVLMLPSKY ILSRWRKDFR IIHASASSNS VALQRDLSIF DYLYVCGHEY FEDVIDIGAR 720 EPELKEFVLS AMKEAKDKLV RPGQTQQGDQ RVDVNMAVTG QVSADRRVDV NMASNTTSII 780 HRDRRVEANL PLNTRALVHE DNMASNTTSL IHGDRRADME MQTPHLIHRE GRVDMNMAAP 840 HLMQRERRVD VNMASPHLIH GDRRVDMNLG SPHFIHSDRR VDMNMASPHL IHGDRRVDMN 900 MASPHLIHGD RRVDMNMTSP HLIHGDTRVD MNMVSTSQDD GMHTFDLVNV NLESSLPMAA 960 TDFMQMHTHP PVYHPKQLLN MRDQVMDSNK RSNVETNTYF IGGGMHVG

Sequence ? help Back to Top

Protein Sequence Length: 1008 aa Download sequence Send to blast

MGEGSERPPH SRPTRAQNPS CEEEEEEEED AAATSRVKDE IADDLNADPA EDEDEEVVVE  60
EGEDEVLVAS DDDDGAADGA GGDEDFVPRT LEEALVPRVG TVFDSVDEAF SLYKAYAFRM  120
GFHAVRRTCH NYEGIRYRST FSCTQAGKSR EGAAPSEVPG ARYPLRNKRG AATREKRARR  180
TTAEKTGCKA MLVIRDKRVN DRWKVEFVDL DHNHPCTPDM VRFLKAYREM PDSAKKKAKI  240
TREMDEMVEK SLSEIAETRK FPSRPKRSVS GGAAVGGLRF NRTDSFVQRF GDEDLIAVKK  300
FIEMMQEKKP NFIHSWDLDQ ESRLKNFFWT DLRSQAQYCY FGDVISLDVM YLQHSRASLP  360
LATLLGVNNH GHLVLLGCGL LSKDSKENYV WLLKRWLSCM NGKPPEAITT SYSDVVAEAV  420
AEVLPDSRHR FCFWHILKKL QENVGRTHEK EAISLRFKEV VYDTVTLTDF EKEWEAMVEH  480
YKLKDNEWFS ALYSCRKQWA PGYVNHSFWA GTSAIRKVEK PDPYFDGVVT SKTTLPVFLE  540
QYETTLRGKL EREAYDDLRS YYSRLTLLSG LPFEEQLVKL YTVPMFQAFQ DEIKQLMHVI  600
CKEVDRSGNS ITYMASELIQ GKKVDYTVVY NNSDKDVWCI CRSFPSRGIL CSHALSVLKQ  660
ENVLMLPSKY ILSRWRKDFR IIHASASSNS VALQRDLSIF DYLYVCGHEY FEDVIDIGAR  720
EPELKEFVLS AMKEAKDKLV RPGQTQQGDQ RVDVNMAVTG QVSADRRVDV NMASNTTSII  780
HRDRRVEANL PLNTRALVHE DNMASNTTSL IHGDRRADME MQTPHLIHRE GRVDMNMAAP  840
HLMQRERRVD VNMASPHLIH GDRRVDMNLG SPHFIHSDRR VDMNMASPHL IHGDRRVDMN  900
MASPHLIHGD RRVDMNMTSP HLIHGDTRVD MNMVSTSQDD GMHTFDLVNV NLESSLPMAA  960
TDFMQMHTHP PVYHPKQLLN MRDQVMDSNK RSNVETNTYF IGGGMHVG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_56419.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251205	0.0	AK251205.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf106g10, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199937.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A446QQI8	0.0	A0A446QQI8_TRITD; Uncharacterized protein
STRING	MLOC_56419.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	4e-81	FAR1-related sequence 6