PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56322.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 809aa    MW: 92756.2 Da    PI: 5.8552
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56322.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.2e-2057143190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++  t+tgCkak+ vk  + +++wev+ leleHnH+l 
  MLOC_56322.2  57 QFYVAYGCRSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKIIVKDAHfQNRWEVIVLELEHNHPLD 143
                   6****************99988..9999**************99877..77788889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1757144IPR004330FAR1 DNA binding domain
PfamPF105511.5E-20263353IPR018289MULE transposase domain
PROSITE profilePS509669.619541577IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-7541573IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MEEEDYSTES SNEEDVQEDA DKEKTLAEGH VFRPVDIDPE WIPKVGMIFD SEEDAFQFYV  60
AYGCRSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV  120
KDAHFQNRWE VIVLELEHNH PLDPSSVKYK KHLENFPFSL NPPRSSEAPQ SCSVVAHSSS  180
FGDSGIPSSA QIEIKTKIDR NRKLKLGEGD LEALVRFFND MQDRNPCFFH SLDMNEQGQL  240
RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS  300
LGAYVWLFDT WLRCMNATPP PSIITNYCHD VAIAVKKVFP NSRHRFCLWH ILNELPEKLA  360
GMEKKDEVIS TFSTLAYDSV TMPDFDKEWQ EMIHQFQLEG NEWLSKLYEV RTQWAPIYVK  420
EFFWAGMSVT DRSDSATDYF DGWLTSGTSV KMFVEQYEAA VRTKLEKETY EDLQSSQMRP  480
QLMTGLPVEE QAAKMYTTEI FQTFLNEIGH SFQCNCNIFD RTDSVVTYIV SEHVNQTKVD  540
YKVDYDNTED DIWCICRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS  600
MSRDVSLSTQ ELGSYDDLYK LGHRYFAEVV ELGSVNSESK DYALSIMREI RDKVISYEKS  660
LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD  720
TLKKKTKRAY NKRRNATANN LNTMVTATDS IAESTNVQQD QVNEGWPLTS SGAPDTFPYG  780
VETISFDLTQ YNNAPSFHWP ESSSRSQLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56322.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724730.0AK372473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3002N21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171637.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_020201233.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_020201234.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLF2E8J90.0F2E8J9_HORVV; Predicted protein (Fragment)
TrEMBLM0X1R00.0M0X1R0_HORVV; Uncharacterized protein
STRINGMLOC_56322.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-110FAR1-related sequence 6