PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56087.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Trihelix | ||||||||
Protein Properties | Length: 346aa MW: 36934.2 Da PI: 7.0275 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.1 | 4.1e-12 | 23 | 109 | 1 | 70 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekk 70 +W+++ + L+ea++ ++ +r+klk +W +++ + +++g ++p+qCk+k e+++kry+++ + + + MLOC_56087.2 23 EWSESGISRLLEAYEAKWLLRNRAKLKWSDWVDIAHDVsahcsssssdhaskpgtAAGGTAKTPNQCKNKVESMKKRYRAESAAATR 109 5******************************************************************************99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.4E-13 | 21 | 131 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDGLPDTAPP APTPPQQQPK RDEWSESGIS RLLEAYEAKW LLRNRAKLKW SDWVDIAHDV 60 SAHCSSSSSD HASKPGTAAG GTAKTPNQCK NKVESMKKRY RAESAAATRA GVAGAASASG 120 GPSWRFFGRM DGLLKGPASA GCSGQPLAHA EPSCDGMVLP RAPLKAEPEI DAEADVALQQ 180 PPDTAGLSEL LNADANGSAT VKAVDQATHK DKESSRAADS DAANVSSPRS KEIEANDDGA 240 EEVDGTPRKR KGPELDVARS IELLASSFVK IERARLEVYR DTERMRAEAE VKKGEMELRR 300 TEIMAKTQLQ IARLFAKRLK ECVGSRNGGS SSEMDTPTKK GENGSG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56087.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359390 | 0.0 | AK359390.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N03. | |||
GenBank | AK361261 | 0.0 | AK361261.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136F03. | |||
GenBank | AK362187 | 0.0 | AK362187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C24. | |||
GenBank | AK364796 | 0.0 | AK364796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2028H13. | |||
GenBank | AK366532 | 0.0 | AK366532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043N23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168535.1 | 0.0 | trihelix transcription factor ASIL2 isoform X2 | ||||
TrEMBL | A0A287S6X2 | 0.0 | A0A287S6X2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56087.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 5e-36 | sequence-specific DNA binding transcription factors |