PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56087.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 346aa    MW: 36934.2 Da    PI: 7.0275
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56087.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.14.1e-1223109170
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekk 70 
                   +W+++ +  L+ea++ ++   +r+klk  +W +++  +                 +++g  ++p+qCk+k e+++kry+++ + + +
  MLOC_56087.1  23 EWSESGISRLLEAYEAKWLLRNRAKLKWSDWVDIAHDVsahcsssssdhaskpgtAAGGTAKTPNQCKNKVESMKKRYRAESAAATR 109
                   5******************************************************************************99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-1321131No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDGLPDTAPP APTPPQQQPK RDEWSESGIS RLLEAYEAKW LLRNRAKLKW SDWVDIAHDV  60
SAHCSSSSSD HASKPGTAAG GTAKTPNQCK NKVESMKKRY RAESAAATRA GVAGAASASG  120
GPSWRFFGRM DGLLKGPASA GCSGQPLAHA EPSCDGMVLP RAPLKAEPEI DAEADVALQQ  180
PPDTAGLSEL LNADANGSAT VKAVDQATHK DKESSRAADS DAANVSSPRS KEIEANDDGA  240
EEVDGTPRKR KGPELDVARS IELLASSFVK IERARLEVYR DTERMRAEAE VKKGEMELRR  300
TEIMAKTQLQ IARLFAKRLK ECVGSRNGGS SSEMDTPTKK GENGSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56087.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3593900.0AK359390.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N03.
GenBankAK3612610.0AK361261.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1136F03.
GenBankAK3621870.0AK362187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C24.
GenBankAK3647960.0AK364796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2028H13.
GenBankAK3665320.0AK366532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168535.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A287S6X20.0A0A287S6X2_HORVV; Uncharacterized protein
STRINGMLOC_56087.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.15e-36sequence-specific DNA binding transcription factors