PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_56075.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 14968.3 Da PI: 9.401 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.7e-40 | 29 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +CaaCk+lrr+Ca++C+++p f +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+aela++ MLOC_56075.2 29 PCAACKLLRRRCAQECPFSPFFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVHALEAELAAV 125 7***********************************************************************************************9 PP DUF260 98 kee 100 ++e MLOC_56075.2 126 RAE 128 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.114 | 28 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-40 | 29 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MMAAARRSSS LPAAGAGPAS TPSFNTMTPC AACKLLRRRC AQECPFSPFF SPLEPHKFAS 60 VHKVFGASNV SKMLLEVHES QRGDAANSLV YEANLRLRDP VYGCMGAILT LQQQVHALEA 120 ELAAVRAEIL KHRYRPAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-41 | 29 | 132 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-41 | 29 | 132 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_56075.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-117 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167556.1 | 1e-96 | LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 1e-64 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A287EY42 | 6e-97 | A0A287EY42_HORVV; Uncharacterized protein | ||||
STRING | MLOC_56075.1 | 9e-98 | (Hordeum vulgare) | ||||
STRING | Traes_1BS_8F922CA93.1 | 6e-97 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 5e-57 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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