PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5600.6
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 222aa    MW: 25146.8 Da    PI: 6.2268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5600.6genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-1924111699
                  ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  t+ d ++++r+v+p +f+ ++   k   s  + le ++g++++v +  + ++++++l++GW+ Fv++n++ egD+++F++ g+ +f  +v vf++
  MLOC_5600.6  24 THMDRHSRHRMVIPERFV-NYfAWK--LSAAIELEAPNGNVYDVGI--TERRNKTLLRSGWEAFVDDNHIVEGDSLMFRYCGNCCF--KVVVFDS 111
                  5679999***********.553433..6789***************..999999********************************..7777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-2316114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.26719112IPR003340B3 DNA binding domain
CDDcd100176.06E-2120110No hitNo description
Gene3DG3DSA:2.40.330.104.0E-2120114IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-1122112IPR003340B3 DNA binding domain
PfamPF023628.4E-1824110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN  60
VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC  120
ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS  180
PSDDFSEDSP YEHESSESDD QMLATPLYVL SGKCYVTEED EA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5600.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.11e-122B3 domain-containing protein Os03g0619600-like
TrEMBLA0A287NBB21e-166A0A287NBB2_HORVV; Uncharacterized protein
STRINGMLOC_5600.41e-166(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-17B3 family protein