PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5600.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 187aa    MW: 21153.6 Da    PI: 8.2746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5600.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1924111699
                  ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  t+ d ++++r+v+p +f+ ++   k   s  + le ++g++++v +  + ++++++l++GW+ Fv++n++ egD+++F++ g+ +f  +v vf++
  MLOC_5600.5  24 THMDRHSRHRMVIPERFV-NYfAWK--LSAAIELEAPNGNVYDVGI--TERRNKTLLRSGWEAFVDDNHIVEGDSLMFRYCGNCCF--KVVVFDS 111
                  5679999***********.553433..6789***************..999999********************************..7777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2316114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.26719112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-2120114IPR015300DNA-binding pseudobarrel domain
CDDcd100172.69E-2020110No hitNo description
SMARTSM010194.9E-1122112IPR003340B3 DNA binding domain
PfamPF023625.6E-1824110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN  60
VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC  120
ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS  180
PSDDFSG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5600.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152556.11e-98B3 domain-containing protein Os03g0619600-like
SwissprotQ10GP01e-41Y3198_ORYSJ; Putative B3 domain-containing protein Os03g0619850
TrEMBLA0A287NBB21e-138A0A287NBB2_HORVV; Uncharacterized protein
STRINGMLOC_5600.41e-137(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-17B3 family protein