PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5600.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27612.7 Da PI: 6.5714 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.6 | 2.7e-19 | 40 | 127 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t+ d ++++r+v+p +f+ ++ k s + le ++g++++v + + ++++++l++GW+ Fv++n++ egD+++F++ g+ +f +v vf++ MLOC_5600.4 40 THMDRHSRHRMVIPERFV-NYfAWK--LSAAIELEAPNGNVYDVGI--TERRNKTLLRSGWEAFVDDNHIVEGDSLMFRYCGNCCF--KVVVFDS 127 5679999***********.553433..6789***************..999999********************************..7777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.08E-22 | 32 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.267 | 35 | 128 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.54E-21 | 36 | 126 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-21 | 36 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.9E-11 | 38 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-17 | 40 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MIHVSPRNHR TLIGGQMSNS CQCCKRYWTH LHGKVRCFVT HMDRHSRHRM VIPERFVNYF 60 AWKLSAAIEL EAPNGNVYDV GITERRNKTL LRSGWEAFVD DNHIVEGDSL MFRYCGNCCF 120 KVVVFDSSGC EKVVSCARSR RQININDQEP STNSADISTS FSDGSTHSSA RGRSVDWQSG 180 TLGHCRKRAR TDAISSPSDD FSEDSPYEHE SSESDDQMLA TPLYVLSGKC YVTEEDEANI 240 VELV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5600.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152556.1 | 1e-123 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A287NAY7 | 0.0 | A0A287NAY7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5600.4 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-17 | B3 family protein |