PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26284.2 Da PI: 6.0316 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.5e-19 | 24 | 111 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t+ d ++++r+v+p +f+ ++ k s + le ++g++++v + + ++++++l++GW+ Fv++n++ egD+++F++ g+ +f +v vf++ MLOC_5600.2 24 THMDRHSRHRMVIPERFV-NYfAWK--LSAAIELEAPNGNVYDVGI--TERRNKTLLRSGWEAFVDDNHIVEGDSLMFRYCGNCCF--KVVVFDS 111 5679999***********.553433..6789***************..999999********************************..7777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.61E-23 | 16 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.267 | 19 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.43E-21 | 20 | 110 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-21 | 20 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.9E-11 | 22 | 112 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.3E-18 | 24 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MSNSCQCCKR YWTHLHGKVR CFVTHMDRHS RHRMVIPERF VNYFAWKLSA AIELEAPNGN 60 VYDVGITERR NKTLLRSGWE AFVDDNHIVE GDSLMFRYCG NCCFKVVVFD SSGCEKVVSC 120 ARSRRQININ DQEPSTNSAD ISTSFSDGST HSSARGRSVD WQSGTLGHCR KRARTDAISS 180 PSDDFSAEDS PYEHESSESD DQMLATPLYV LSGKCYVTEE DEANIVELVR EI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5600.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152556.1 | 1e-128 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A287NAV1 | 1e-173 | A0A287NAV1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5600.4 | 1e-169 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-17 | B3 family protein |