PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 19818.1 Da PI: 10.334 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.3 | 7.7e-20 | 21 | 96 | 53 | 128 |
NAM 53 aeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e ++ yfFs r+ +++ +g r++ra +sgyWkatgk+k+v+++ k+ lvg+k+ L+f++g++ +tdWvmheyrl MLOC_55957.1 21 SEGESAYFFSLRQAASSgRGGRRRRA-ASGYWKATGKEKPVFVQlpvgKRLLVGVKTALAFHRGKS----RTDWVMHEYRL 96 455678*****999887346666665.78**************999977778**********6544....79*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.394 | 1 | 124 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-24 | 15 | 124 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-12 | 25 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEVELVGLIS FRFELIAAGA SEGESAYFFS LRQAASSGRG GRRRRAASGY WKATGKEKPV 60 FVQLPVGKRL LVGVKTALAF HRGKSRTDWV MHEYRLAGAA EQNKRANDDS PQSSEWVVCR 120 VSLKSRARRA AAGRETTADH HQQPSPSSTS SCVTDHACHA PDQEEVSSQQ QQEQQHPRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-15 | 27 | 125 | 72 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55957.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356899 | 0.0 | AK356899.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168455.1 | 1e-71 | NAC domain-containing protein 41-like | ||||
TrEMBL | M0X001 | 1e-128 | M0X001_HORVV; Uncharacterized protein | ||||
STRING | MLOC_55957.2 | 1e-114 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-16 | Arabidopsis NAC domain containing protein 87 |