PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55909.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 857aa    MW: 97161.4 Da    PI: 7.0221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55909.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032707730122
                   EEET..TTTEEESSHHHHHHHHHH CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt 22 
                   ++C    C++sFs++ +L  H r 
  MLOC_55909.2 707 FPCDieGCDMSFSSQQDLLLHKRD 730
                   789999***************985 PP
2zf-C2H211.10.0012790816123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                   y+C    Cg++F+  s++ rH r+  H
  MLOC_55909.2 790 YECMvpGCGQTFRFVSDFSRHKRKtgH 816
                   788888****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.4707729IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97730759IPR007087Zinc finger, C2H2
SMARTSM0035515730754IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.21E-5731763No hitNo description
PROSITE patternPS000280732754IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-4732758IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.0E-10759784IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016760784IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.406760789IPR007087Zinc finger, C2H2
PROSITE patternPS000280762784IPR007087Zinc finger, C2H2
SuperFamilySSF576679.2E-11770813No hitNo description
Gene3DG3DSA:3.30.160.601.9E-10785813IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.24790816IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72790821IPR007087Zinc finger, C2H2
PROSITE patternPS000280792816IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
GQASEALSVS LAHVSDRCGQ LYSRNNNGSS SALGLLASTY GSSDSEEESN QGKDNQLLET  60
SFSLSSTDTN HLAKLREQGT SYDQCSVYVD LANDPTISGV KSYSDTHLTT AKSSIEPDVL  120
TQLKYNKDSC RMHVFCLEHA LGTWTQLQKI GGANVMLLCH PEYPRAESTA KFIAEELGLK  180
PDWKDVDFEE ATDDDIRRIQ LALHDEDAEP ASSDWAVKMG INIYYSAKQS KSPLYSKQIP  240
YNSIIYDVFG QENPDNLTDY GRQRSGVTKK RVAGCWCGKV WMSNQVHPFL VREHEEHNHA  300
IVCSKVMLGA NYHAKVHDEP SLTCNTIVIC SPSERISRRK GGDSIEKSGA RKKRCSANDE  360
ATLPCSSLGT NPKTINDQPR NFDDHDKHEG GKIAEAPSTQ QYQHLQSMNM KSSSNKPKDD  420
KGKCNFLDLY DEDNGVDCWF NIDSGDNAAI RNLEDSRQKE LDTVKVKSPG KLQGNMRKSS  480
KCKVRDDSLN GDKKVQKVNK KSISRKQKDV DINTQFREEY KEDNNWDEVP EGKDHDVEVE  540
SRPKTRSGED DKRNNYSHEL RYEDNDMDCW HDRHGGENAT MGNLDNSPVQ RLEAAEVKSG  600
GKLHCCKRKS SKGKAKDDYS NGDEKLQMLN IESISRKQKS DNQFDEGCDR DNALDSLLND  660
VDEATRENCY EVREEEMDGM EVKPRGKVQT GKRKTSRCQA GDKAAKFPCD IEGCDMSFSS  720
QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHMDERPL NCEWKGCKKT FKWPWARTEH  780
MRVHTGVRPY ECMVPGCGQT FRFVSDFSRH KRKTGHSSGR VAHPGLWVFF LVIRFFSWLS  840
DMDFVLNMQQ CFFPLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-5670481720133Lysine-specific demethylase REF6
6a58_A9e-5670481720133Lysine-specific demethylase REF6
6a59_A9e-5670481720133Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337353RRKGGDSIEKSGARKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55909.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLT1MUD30.0T1MUD3_TRIUA; Uncharacterized protein
STRINGMLOC_55909.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.15e-54relative of early flowering 6