PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_55870.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 303aa    MW: 32026.6 Da    PI: 8.3993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_55870.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14115166155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  MLOC_55870.2 115 QRMTHIAVERNRRRLMNDHLASLRSLIPSD---YIPRGDQATVVGGAIDYVKQLE 166
                   79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-15106174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-11113166No hitNo description
PROSITE profilePS5088814.589114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13115169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MERMQLQGPI LTSLCWADQA AASASAAQVP FLALLQGAMG DGGPGAKRES YSGGAGFACR  60
PAASDVDLLE SCVTQLPAPP AIEAPAAKRR KRPRTRPRAA PPPEKRKKPE EAECQRMTHI  120
AVERNRRRLM NDHLASLRSL IPSDYIPRGD QATVVGGAID YVKQLEQQLV ALQALAAAQR  180
GEGPVGTAAT AASDGVFVSP QYTSFSEARG IGGGVDVEAM SAVGGHVRVR VAGRRWPGRL  240
VRAVAAMENL RMAVLHLAVT SVGHDAVVYC FNLKMEDGCE VSTADEVATV VHQIFAYAAG  300
SCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189107RKRPRTRPRAAPPPEKRKK
2115126RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_55870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554700.0AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151391.11e-170transcription factor bHLH57-like
TrEMBLF2CV180.0F2CV18_HORVV; Predicted protein
STRINGMLOC_55870.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.19e-40bHLH family protein