PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 405aa MW: 44159 Da PI: 4.9611 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 79.3 | 6.7e-25 | 300 | 403 | 2 | 108 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lLl+cA+a+s+++ + a++lL+r++++++p+gd+ qRla+yf eAL arla+ +sely++l +++ts +++ l+a +l+ ++ + k++++ aN MLOC_5548.1 300 QTLLLNCAQALSTDNRRTASELLKRIRQHSTPKGDAAQRLAHYFGEALDARLAGRGSELYQSLMARRTS---VADFLKANQLYMAACCCKKVAFIFAN 394 689**************************************************************9999...************************** PP GRAS 100 qaIleaveg 108 ++I +av g MLOC_5548.1 395 KTICNAVVG 403 ****99866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.943 | 273 | 405 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-22 | 300 | 403 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MAATPEEFLG QQSFLARLEP PSPSLFLGLP PTPRGVDDRD SSFDDMALPY ISRLLEEDME 60 DHFFYLYPNH PALLRAQLPF AQILVDVADS ASGSTSALSP SSSTSTSTSD ATTPSTTSPY 120 DAAIQISRLP YTQVLGLASG SPDTQSSALL SGDEEAQNPS SDFVIGNYLL PGDQDMLNLS 180 FLKGMEEARK FLPPNSSLPV PAMKVDQAVD GALAGAGLKK KRDTLEPDMG RASKLMTPEQ 240 EEVGAREMFD EMMFQEHEIC MKGVQQLCLR IAVDGEPGKN RRKKGRPRQD SSDSEMVDLQ 300 TLLLNCAQAL STDNRRTASE LLKRIRQHST PKGDAAQRLA HYFGEALDAR LAGRGSELYQ 360 SLMARRTSVA DFLKANQLYM AACCCKKVAF IFANKTICNA VVGRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363346 | 0.0 | AK363346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2014K12. | |||
GenBank | AK366442 | 0.0 | AK366442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172169.1 | 0.0 | scarecrow-like protein 33 | ||||
Refseq | XP_020172170.1 | 0.0 | scarecrow-like protein 33 | ||||
TrEMBL | A0A287NN83 | 0.0 | A0A287NN83_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5548.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP231 | 31 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 3e-39 | GRAS family protein |