PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_55252.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26829.8 Da PI: 10.3159 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.4e-05 | 158 | 181 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ s + +L+ H+ + H MLOC_55252.2 158 FPCKVCGEVLSKPQQLELHQAMkH 181 89******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.037 | 158 | 186 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 160 | 181 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAGGARCSAL LRGFLSLFFV MFLHIGHAGC CFSPAVSSST GVEERAGARR RGRHVSSLAT 60 SLRCYIHRIF SSAGPRNAVP GGEEEEEAVT TTVSSSPLAQ SVTRRQTSVL LSTPSSPCAS 120 PFLSPMSPQS LSVTPLVPCS PLATRQLSRS FAARGDLFPC KVCGEVLSKP QQLELHQAMK 180 HSLSELTHLD SSMNIIRMIF LAGWGLPASG AGAGAGDPPA VGRILRIHHN PRALSRFEEY 240 RDLVRARPAR P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_55252.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036884 | 9e-83 | BT036884.1 Zea mays full-length cDNA clone ZM_BFb0145P22 mRNA, complete cds. | |||
GenBank | BT066435 | 9e-83 | BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds. | |||
GenBank | BT084542 | 9e-83 | BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds. | |||
GenBank | EU954611 | 9e-83 | EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153470.1 | 1e-141 | uncharacterized protein LOC109738783 | ||||
TrEMBL | A0A287PB96 | 1e-167 | A0A287PB96_HORVV; Uncharacterized protein | ||||
STRING | MLOC_55252.1 | 1e-173 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-17 | C2H2 family protein |